Biodiversity of fungi pdf

Diversity and richness of marine fungi on by Aveskamp et al. These authors recognize two Portuguese marinas. Nova Hedwigia, 90 3—4 : the complexity of this group, which is considered to — This explains why Barata, M. Thesis, Lisbon Univ. Fungi in the Halophyte Spartina maritima Concerning our isolate of Stachybotrys sp. In: Fungi marine environments: parisons of sequence data support the coincidence — K.

Hong Kong. Friesia, X 4—5 : Barghoorn, E. Marine fungi: — Farlowia, 1: — Koch, J. A check list of Bryne, P. Lignicolous higher marine fungi on wood from Danish coast. Mycotaxon, — Suppl, 5: — Kohlmeyer, J. Marine Mycol- Bucher, V. Academic Press, New York. Production of wood decay enzymes, Kohlmeyer, J. Il- mass loss and lignin solubilization in wood by lustrated key of filamentous higher marine fungi.

Fungal Botanica Marina, 1— Diversity, 1— Fungi on Juncus roemarianus. More Campbell, J. Volkmann—Kohlmeyer, B. Coelomycetes, including Tetranacriella.

Spatafora, J. A re— nov. Botanica Marina, — Mycological Research, ne species of Anthostomella, with a list of fungi 5 : — Know for Spartina. Mycological Research, 3 : Domsch, K. Compedium of — Volume I. Academic Press, London. Marine Ascomycete from algae and animal Figueira, D. Marine fungi on two hosts. Mycologia, 99 1 : 20— Landy, E. What is the Fun- Gessner, R. Spartina alterniflora from Rhode Islands estuary. Lintott, W. Marine fungi from Mycologia, — New Zeland.

Fungal Diversity Press, Abundance and diversity of microfungi in Hong Kong. Mycoscience, Maria, G. Diversity of fila- — A plant species from the southwest coast of India.

Myco- Fungal Diversity, — Morrison—Gardiner, S. Dominant fungi from Grasso, S. Australian coral reefs. Fungal Diversity, 9: — Lignicolous marine fungi in the straits of Messina, Mouzouras, R. Hydrobiologia, — Moss, S. Decay of wood by micro—organ- Grasso, S. Annual Lignicolous marine fungi in a Harbour Environments Convention. Petersen, K. Substrate pref- Hall, T.

BioEdit: a user—friendly biological erence and vertical zonation of lignicolous marine sequence alignment editor and analysis program fungi on Mooring posts of Oak Quercus sp. Ser, Larch Larix sp. Bo- 95— Hyde, K. Pictorial Key to Poon, M. Fungi incertae sedis We here discuss some groups whose classification, even to the level of broad taxonomic affiliation, remains elusive. Table 6 Fungi incertae sedis and environmental taxa.

Concluding remarks The Fungi is a fascinating group of organisms entailing a vast diversity that have important roles in virtually all ecosystems. The revised classification of eukaryotes. Journal of Eukaryotic Microbiology 59 , 1— Revisions to the classification, nomenclature, and diversity of eukaryotes.

Journal of Eukaryotic Microbiology 66 , 4— Nature Microbiology 3 , — An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98 , — Springer, Berlin Heidelberg. Proceedings of the National Academy of Sciences , — Microsporidian diversity in soil, sand, and compost of the Pacific Northwest.

Journal of Eukaryotic Microbiology 60 , — Biodiversity of anaerobic fungi from ruminants in Republic of Macedonia. Biodiversity International Journal 1 , — Clarifying the relationships between Microsporidia and Cryptomycota. The Journal of Eukaryotic Microbiology 0 , 1— Ultrastructural markers and systematics in smut fungi and allied taxa. Canadian Journal of Botany 75 , — Entorrhizomycota: a new fungal phylum reveals new perspectives on the evolution of Fungi.

PLoS One 10 , 1— A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data. Challenges and future perspectives in the systematics of Kickxellomycotina, Mortierellomycotina, Mucoromycotina, and Zoopagomycotina In Biology of Microfungi , pp.

Springer, Cham. Life cycle stages of Batrachochytrium dendrobatidis Longcore et al. Diseases of Aquatic Organisms 68 , 51— Analogs of the Golgi complex in microsporidia: structure and avesicular mechanisms of function. Journal of Cell Science , — The dawn of symbiosis between plants and fungi. Biology Letters 7 , — The Catalogue of Life: towards an integrative taxonomic backbone for biodiversity In Biodiversify.

Biodiversity: Progress and Problems eds Nimis P. Howlett, Pedro W. Crous, Eva H. Stukenbrock, Timothy Y. James and Neil A. Gow , pp. Molecular evolution of the fungi: relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes. Molecular Biology and Evolution 9 , — Mating in mushrooms: increasing the chances but prolonging the affair. Trends in Genetics 17 , — Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences.

Molecular Phylogenetics and Evolution 1 , — Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi. BMC Biology 10 , 1— Eukaryote kingdoms: Seven or nine? Biosystems 14 , — Phylogenomic analyses indicate that early Fungi evolved digesting cell walls of algal ancestors of land plants.

Genome Biology and Evolution 7 , — Preliminary phylogeny of Coemansia Kickxellales , with descriptions of four new species from Taiwan. Mycologia , — Heitman, B. Howlett, P. Crous, E. Stukenbrock, T. James and N. Bioresource Technology 76 , — Microsporidia: a journey through radical taxonomical revisions. Fungal Biology Reviews 23 , 1—8. Rediscovery of Nucleophaga amoebae , a novel member of the Rozellomycota.

Parasitology Research , — Molecular identification of Nucleophaga terricolae sp. Rozellomycota , and new insights on the origin of the Microsporidia. New insights from molecular phylogenetics of amoebophagous fungi Zoopagomycota, Zoopagales. The fungal genome initiative and lessons learned from genome sequencing. Methods in Enzymology , — Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth. Genome Research 22 , — Fungal biodegradation and enzymatic modification of lignin.

International Journal of Biochemistry and Molecular Biology 1 , 36— Molecular Phylogenetics and Evolution , — Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism.

Science , — Developments in yeast taxonomy. Acta Alimentaria 42 , 55— Cytology and molecular phylogenetics of Monoblepharidomycetes provide evidence for multiple independent origins of the hyphal habit in the Fungi.

Verrucocephalum , a new nematophagous genus in the Helicocephalidaceae Zoopagales. Mycoscience 55 , — A new species of Mortierella , and an associated sporangiiferous mycoparasite in a new genus, Nothadelphia. Studies in Mycology 50 , — Multigene phylogeny of Endogonales, an early diverging lineage of fungi associated with plants.

IMA Fungus 8 , — Septal pore cap protein SPC18, isolated from the basidiomycetous fungus Rhizoctonia solani , also resides in pore plugs. Eukaryotic Cell 7 , — Septal pore complex morphology in the Agaricomycotina Basidiomycota with emphasis on the Cantharellales and Hymenochaetales.

Mycological Research , — The predacious fungi: Zoopagales and Moniliales. Biological Reviews 31 , — Yeast evolutionary genomics. Nature 11 , — Genome diversity and evolution in the budding yeasts Saccharomycotina. Genetics , — Genome evolution in yeasts.

Nature , 35— Yeasts dominate soil fungal communities in three lowland Neotropical rainforests. Environmental Microbiology Reports 9 , — A consistent phylogenetic backbone for the Fungi. Molecular Biology and Evolution 29 , — Stop neglecting fungi. Nature Microbiology 2 , Aquamortierella , a New Genus in the Mucorales.

Bulletin of the Torrey Botanical Club 94 , — Symbiotic options for the conquest of land. Moulds in food spoilage. International Journal of Food Microbiology 33 , 85— Molecular Phylogenetics and Evolution 36 , — Tackling emerging fungal threats to animal health, food security and ecosystem resilience. Philosophical Transactions of the Royal Society of London.

Series B, Biological Sciences , Hyphal tip growth and cytoplasmic characters of Conidiobolus coronatus Zoopagomycota, Entomophthoromycotina. Mycologia , 31— The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Hyaloraphidium curvatum : a linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi. Molecular Biology and Evolution 19 , — A new species of Rozella parasitic on Allomyces.

Journal of the Elisha Mitchell Scientific Society 53 , — Start teaching mycology! Frenken, T. Warming accelerates termination of a phytoplankton spring bloom by fungal parasites. Global Change Biology 22 , — Integrating chytrid fungal parasites into plankton ecology. Research gaps and needs. Environmental Microbiology 19 , — The Journal of Cell Biology , — Evolutionary role of interspecies hybridization and genetic exchanges in yeasts. Current Opinion in Microbiology 10 , — Evolutionary genomics of Metchnikovella incurvata Metchnikovellidae , an early branching microsporidium.

Genome Biology and Evolution 10 , — Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Molecular Biology and Evolution 17 , — Diversity and control of spoilage fungi in dairy products: an update. Microorganisms 5 , 1— Molecular Phylogenetics and Evolution 65 , — Journal of Molecular Evolution 43 , 71— The ultrastructure of cell walls in some sporocarpic species of Densospora , Glomus and Endogone.

Australasian Mycologist 22 , 73— Can zoosporic true fungi grow or survive in extreme or stressful environments?

Extremophiles 14 , — Ecological potentials of species of Rozella Cryptomycota. Fungal Ecology 5 , — Ecological functions of zoosporic hyperparasites. Frontiers in Microbiology 5 , Life with genes. Fungi associated with rocks of the Atacama Desert: taxonomy, distribution, diversity, ecology and bioprospection for bioactive compounds. Environmental Microbiology 18 , — Zoologichesky Zhurnal 79 , — Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi.

Fungal Ecology 19 , 28— Lichenized fungi and the evolution of symbiotic organization. Microbiology Spectrum 4 , — Anaerobic fungi phylum Neocallimastigomycota : advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. Molecular phylogeny of the Entomophthoromycota.

Phylogenetic lineages in Entomophthoromycota. Persoonia 30 , 94— Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites. Pecoramyces ruminantium , gen. Feramyces austinii , gen. Capellomyces foraminis gen. A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi. Genome Biology 12 , 1— Comparative genomics suggests that the fungal pathogen Pneumocystis is an obligate parasite scavenging amino acids from its host's lungs.

PLoS One 5 , 1—7. Functional and phylogenetic implications of septal pore ultrastructure in the ascoma of Neolecta vitellina. A phylogenetic overview of the Agaricomycotina. The anamorphic genus Calcarisporiella is a new member of the Mucoromycotina. Mycoscience 53 , — Sphaerocreas pubescens is a member of the Mucoromycotina closely related to fungi associated with liverworts and hornworts.

Genomics and the making of yeast biodiversity. Mortierellomycotina subphyl. Mycotaxon , — Synopsis of a revised classification for the Entomophthorales Zygomycotina. Mycotaxon 34 , — Entomophthoromycota: a new phylum and reclassification for entomophthoroid fungi. Novel basal, fungal lineages from freshwater phytoplankton and lake samples. Environmental Microbiology Reports 7 , — No jacket required—new fungal lineage defies dress code: recently described zoosporic fungi lack a cell wall during trophic phase.

BioEssays 34 , 94— Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Canadian Journal of Botany 78 , — Nature , — A molecular phylogeny of the flagellated fungi Chytridiomycota and description of a new phylum Blastocladiomycota. Shared signatures of parasitism and phylogenomics unite Cryptomycota and Microsporidia.

Current Biology 23 , — Discovery of novel intermediate forms redefines the fungal tree of life. Fire and Materials 42 , — Liebetanzomyces polymorphus gen. MycoKeys 40 , 89— Mycoloop: chytrids in aquatic food webs. Frontiers in Microbiology 5 , 1—9. Mucor indicus : biology and industrial application perspectives: a review. Biotechnology Advances 31 , — Morphology, phylogeny, and ecology of the aphelids Aphelidea, Opisthokonta and proposal for the new superphylum Opisthosporidia.

Molecular phylogeny and ultrastructure of Aphelidium aff. Protist , — Monoblepharidomycetes diversity includes new parasitic and saprotrophic species with highly intronized rDNA. Fungal Biology , — Morphological and genetic diversity of Opisthosporidia: new Aphelid Paraphelidium tribonemae gen.

Journal of Eukaryotic Microbiology 64 , — Molecular Biology and Evolution 17 , 23— A fungus eats a cyanobacterium: the story of the Geosiphon pyriformis Endocyanosis. Royal Irish Academy. Wettstein, an endosymbiotic association of fungus and cyanobacterium.

Planta , — Geosiphon pyriforme , an endosymbiotic consortium of a fungus and a cyanobacterium Nostoc , fixes nitrogen. Botanica Acta , — Springer, Dordrecht. Tetrapolar fungal mating types: sexes by the thousands. Proceedings of the Royal Society Biological Sciences , — McLaughlin and J.

Spatafora , pp. Springer, Berlin, Heidelberg. Ubiquinone and carotene production in the Mucorales Blakeslea and Phycomyces. Applied Microbiology and Biotechnology 76 , — Taxonomy of fungi causing mucormycosis and entomophthoramycosis zygomycosis and nomenclature of the disease: molecular mycologic perspectives.

Clinical Infectious Diseases 54 , 8— Morphology and ultrastructure of Neolecta species. Journal of Eukaryotic Microbiology 40 , — Phylogenetic systematics of Syncephalis Zoopagales, Zoopagomycotina , a genus of ubiquitous mycoparasites. Morphological, molecular, and ultrastructural characterization of Rozella rhizoclosmatii , a new species in Cryptomycota.

Fungal Biology , 1— Morphology, ultrastructure, and molecular phylogeny of Rozella multimorpha , a new species in Cryptomycota. Journal of Eukaryotic Microbiology 65 , — Interactive tree of life iTOL v3: an online tool for the display and annotation of phylogenetic and other trees.

Nucleic Acids Research 44 , — Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus. PLoS Genetics 10 , 1— Systema naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Editio duodecima. Regnum Animale. Liu, Y. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. BMC Evolutionary Biology 6 , Making two organelles from one: Woronin body biogenesis by peroxisomal protein sorting.

Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts. Molecular Biology and Evolution 26 , 27— Towards an integrated phylogenetic classification of the Tremellomycetes.

Studies in Mycology 81 , 85— Rhizopus oryzae — ancient microbial resource with importance in modern food industry. International Journal of Food Microbiology , — Batrachochytrium dendrobatidis gen. Mycologia 91 , — Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91 , — Pathogenicity of Conidiobolus spp.

Fungal Ecology 1 , 33— Saprotrophy of Conidiobolus and Basidiobolus in leaf litter. Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. International Microbiology 8 , — Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota. Unit I consists of six chapters that cover general issues relevant to all And therein lies the real danger of ID. Serious researchers If its proponents succeed, science as we protozoa in animal rumens to the lichens should take special note of the chapters know it will change, for the worse.

After you finished looking on and tical considerations. It would be techniques. Unit III is a collection of use- like disease, and failed to make testable an immense task, but luckily you now ful resources, including recipes for culture predictions. What bet- called Biodiversity of Fungi: Inventory and vendors; and a glossary.

This volume illus- Unit II is organized mostly by habitat. If task into more manageable chunks. Along the way, the book courages researchers not only to carefully Department of Plant Biology acknowledges the many difficulties that record their discoveries—with annotated University of Georgia researchers face when inventorying fungi: voucher specimens deposited in Athens, GA the huge number of undescribed species, herbaria—but also to create computer- the ubiquity of fungi nearly everywhere References cited ized databases in a form that others can on Earth with scores of species coloniz- Behe MJ.

After all, they argue, no one ben- ing the same tiny substrate , multiple chemical Challenge to Evolution. New York: efits from poorly documented or inac- correct binomial names for different Free Press. Baltimore: Johns Hopkins University Press. Two of the Because it is so wide-ranging, this book editors have extensive experience in my- will be useful for both beginners and cology. Gregory M. Mueller is curator of experts.

Many chapters are extremely mycology and chair of botany at the Field user-friendly, giving easy-to-follow in- Museum of Natural History in Chicago; structions for collecting fungi, preserving Gerald F. Bills studies the systematics, cultures, and keeping records. Mercedes S. A clado- Monitoring Methods. History, has previously edited books on gram accompanies the discussion of each Mueller, Gerald F.

Bills, and Mercedes S. Elsevier Academic Press, diversity of mammals and amphibians. The obscuring them in a mix of different for- of species diversity was hard for me to fol- appendix would have been a more suit- mats. Without extensive training in this able place for this topic. Just as the content coverage is uneven, area, I found it hard to tell how the A more significant problem is that the so are the illustrations.

Many chapters subtopics related to each other. Thank- chapters do not follow a standardized notably those on fungi that eat other fully, the authors included several help- outline, so the contents vary widely from fungi, rotifers, and nematodes have ful summary tables, and the chapter is chapter to chapter.

For example, some excellent art and abundant, beautiful, useful because it brings relevant refer- chapters have as many as 12 sections, large photos. Other chapters, however, ences together in one place. The chap- My favorite parts of the book were section titles are inconsistent from chap- ters on voucher specimens, culture those that directly supported its mission ter to chapter.

Some chapters include ad- preservation, yeasts, and chytrids would to guide researchers in finding fungi. I en- vice on designing sampling schemes or be more useful if the procedures and im- joyed reading the parts that explained fixing material for DNA analysis; others portant structures were not left to the how to select sampling locations, how do not.

Even with these limitations, Biodiver- for fungi, what information to collect in Some chapters include conclusions or sity of Fungi is a welcome addition to my the field, how much time to expect to recommendations for future research; reference bookshelf.

I have often wished spend in the field and in the lab, and others do not. One pling methods in one place, and I am chapter has wonderful examples of data I have often wished for a book that grateful that this enormous team of ed- sheets; another has an appendix that itors and authors has completed this suggests the size, type, and format of combined fungal sampling methods in heroic undertaking.

As a bonus, the book fields one could incorporate into a com- one place, and I am grateful that this makes a strong case for the importance puterized database. I also liked the prac- of systematically cataloging and quanti- tical discussions showing how statistical enormous team of editors and authors fying fungal diversity. Realistically, sci- and logistical constraints make it difficult has completed this heroic undertaking.

Most chapters contain at that each chapter discusses the issues that at it. Especially useful are those are most relevant to each habitat type, but that list some typical genera, organized by it also leads to uneven coverage.

Two chapters chapter on yeasts, for example, is just six Departments of Zoology and even include keys to genera. The page, pages long, with no illustrations and Botany—Microbiology illustrated glossary was also helpful.

As I sparse detail on where to find yeasts, University of Oklahoma read the book, I tested the glossary by what features to look for, or diversity. Norman, OK looking up several words that I assumed The next chapter, which describes fungi a beginning reader would not know.

Fungal species composition differed greatly between the two sites: the freshwater stream that flowed into the sea and the other, an estuarine region… Expand. Save to Library Save. Create Alert Alert. Share This Paper. Results Citations. Figures and Tables from this paper. Citation Type. Has PDF. Publication Type. More Filters. Checklist of Freshwater Fungi in Thailand. Distribution of fungi on wood in the Totong River, Brunei.